SNP Detail For rs663743
1.Mapping Information
Human SNP ID rs663743
Human chromosome chr11
Human SNP position 64340263
Pig chromosome chr2
Pig SNP position 6992729
2.Annotation Information
PubMed ID25642632
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25642632
StudyDiscovery of six new susceptibility loci and analysis of pleiotropic effects in leprosy.
Disease/TraitLeprosy
Initial sample1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases
Replication sample6,765 Chinese ancestry cases, 9,505 Chinese ancestry controls
Region11q13.1
Chromosome idchr11
Chromosome position64340263
Reported geneCCDC88B
Mapped geneLOC102723878, CCDC88B
Upstream gene id
Downstream gene id
SNP gene ids102723878, 283234
Upstream gene distance
Downstream gene distance
SNP risk allelers663743-A
SNPsrs663743
Merged0
SNP id current663743
Context5_prime_UTR_variant
Intergenic0
Allele frequency0.156
P value0.00000000000009
Pvalue mlog13.0457574905606
P value text
Or beta1.24
%95 Ci[NR]
PlatformIllumina [4577171] (imputed)
CNVN
Mapped traitleprosy
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001054
Study accessionGCST002772