Human SNP ID | rs6618677 |
---|---|
Human chromosome | chrX |
Human SNP position | 91557719 |
Pig chromosome | chr6 |
Pig SNP position | 134082308 |
PubMed ID | 22808956 |
---|---|
Journal | N Engl J Med |
Link | www.ncbi.nlm.nih.gov/pubmed/22808956 |
Study | Genetically distinct subsets within ANCA-associated vasculitis. |
Disease/Trait | Antineutrophil cytoplasmic antibody-associated vasculitis |
Initial sample | 914 European ancestry cases, 5,259 European ancestry controls |
Replication sample | 1,454 European ancestry cases, 1,666 European ancestry controls |
Region | Xq21.31 |
Chromosome id | chrX |
Chromosome position | 91557719 |
Reported gene | PCDH11X, PABPC5, PCDH11Y |
Mapped gene | PABPC5 - LOC105373293 |
Upstream gene id | 140886 |
Downstream gene id | 105373293 |
SNP gene ids | |
Upstream gene distance | 119135 |
Downstream gene distance | 214508 |
SNP risk allele | rs6618677-? |
SNPs | rs6618677 |
Merged | 0 |
SNP id current | 6618677 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.00000004 |
Pvalue mlog | 7.39794000867203 |
P value text | |
Or beta | 1.43 |
%95 Ci | [NR] |
Platform | Affymetrix [NR] |
CNV | N |
Mapped trait | anti-neutrophil antibody associated vasculitis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004826 |
Study accession | GCST001613 |