SNP Detail For rs6618677
1.Mapping Information
Human SNP ID rs6618677
Human chromosome chrX
Human SNP position 91557719
Pig chromosome chr6
Pig SNP position 134082308
2.Annotation Information
PubMed ID22808956
JournalN Engl J Med
Linkwww.ncbi.nlm.nih.gov/pubmed/22808956
StudyGenetically distinct subsets within ANCA-associated vasculitis.
Disease/TraitAntineutrophil cytoplasmic antibody-associated vasculitis
Initial sample914 European ancestry cases, 5,259 European ancestry controls
Replication sample1,454 European ancestry cases, 1,666 European ancestry controls
RegionXq21.31
Chromosome idchrX
Chromosome position91557719
Reported genePCDH11X, PABPC5, PCDH11Y
Mapped genePABPC5 - LOC105373293
Upstream gene id140886
Downstream gene id105373293
SNP gene ids
Upstream gene distance119135
Downstream gene distance214508
SNP risk allelers6618677-?
SNPsrs6618677
Merged0
SNP id current6618677
Contextdownstream_gene_variant
Intergenic1
Allele frequencyNR
P value0.00000004
Pvalue mlog7.39794000867203
P value text
Or beta1.43
%95 Ci[NR]
PlatformAffymetrix [NR]
CNVN
Mapped traitanti-neutrophil antibody associated vasculitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004826
Study accessionGCST001613