SNP Detail For rs661054
1.Mapping Information
Human SNP ID rs661054
Human chromosome chr11
Human SNP position 114559688
Pig chromosome chr9
Pig SNP position 46844343
2.Annotation Information
PubMed ID26192919
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26192919
StudyAssociation analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Disease/TraitUlcerative colitis
Initial sample6,968 European ancestry cases, 20,464 European ancestry controls
Replication sample10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls
Region11q23.2
Chromosome idchr11
Chromosome position114559688
Reported geneNR
Mapped geneNXPE1
Upstream gene id
Downstream gene id
SNP gene ids120400
Upstream gene distance
Downstream gene distance
SNP risk allelers661054-?
SNPsrs661054
Merged
SNP id current661054
Contextintron_variant
Intergenic0
Allele frequencyNR
P value3E-20
Pvalue mlog19.5228787452803
P value text(EA)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 9000000] (imputed)
CNVN
Mapped traitulcerative colitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000729
Study accessionGCST003045