Human SNP ID | rs6604026 |
---|---|
Human chromosome | chr1 |
Human SNP position | 92838046 |
Pig chromosome | chr4 |
Pig SNP position | 135983335 |
PubMed ID | 17660530 |
---|---|
Journal | N Engl J Med |
Link | www.ncbi.nlm.nih.gov/pubmed/17660530 |
Study | Risk alleles for multiple sclerosis identified by a genomewide study. |
Disease/Trait | Multiple sclerosis |
Initial sample | 931 European ancestry trios, 2,431 European ancestry controls |
Replication sample | 609 European ancestry trios, 2,322 European ancestry cases, 2,987 European ancestry controls |
Region | 1p22.1 |
Chromosome id | chr1 |
Chromosome position | 92838046 |
Reported gene | RPL5 |
Mapped gene | FAM69A, RPL5 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 388650, 6125 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6604026-C |
SNPs | rs6604026 |
Merged | 0 |
SNP id current | 6604026 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.29 |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | |
Or beta | 1.15 |
%95 Ci | [1.08-1.22] |
Platform | Affymetrix [334923] |
CNV | N |
Mapped trait | multiple sclerosis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003885 |
Study accession | GCST000062 |
PubMed ID | 19525955 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19525955 |
Study | Genome-wide association study identifies new multiple sclerosis susceptibility loci on chromosomes 12 and 20. |
Disease/Trait | Multiple sclerosis |
Initial sample | 1,618 European ancestry cases, 3,413 European ancestry controls |
Replication sample | 2,256 European ancestry cases, 2,310 European ancestry controls |
Region | 1p22.1 |
Chromosome id | chr1 |
Chromosome position | 92838046 |
Reported gene | RPL5, EVI5 |
Mapped gene | FAM69A, RPL5 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 388650, 6125 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6604026-G |
SNPs | rs6604026 |
Merged | 0 |
SNP id current | 6604026 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.28 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 1.17 |
%95 Ci | [NR] |
Platform | Illumina [302098] |
CNV | N |
Mapped trait | multiple sclerosis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003885 |
Study accession | GCST000425 |