SNP Detail For rs6604026
1.Mapping Information
Human SNP ID rs6604026
Human chromosome chr1
Human SNP position 92838046
Pig chromosome chr4
Pig SNP position 135983335
2.Annotation Information
PubMed ID17660530
JournalN Engl J Med
Linkwww.ncbi.nlm.nih.gov/pubmed/17660530
StudyRisk alleles for multiple sclerosis identified by a genomewide study.
Disease/TraitMultiple sclerosis
Initial sample931 European ancestry trios, 2,431 European ancestry controls
Replication sample609 European ancestry trios, 2,322 European ancestry cases, 2,987 European ancestry controls
Region1p22.1
Chromosome idchr1
Chromosome position92838046
Reported geneRPL5
Mapped geneFAM69A, RPL5
Upstream gene id
Downstream gene id
SNP gene ids388650, 6125
Upstream gene distance
Downstream gene distance
SNP risk allelers6604026-C
SNPsrs6604026
Merged0
SNP id current6604026
Contextintron_variant
Intergenic0
Allele frequency0.29
P value0.000008
Pvalue mlog5.09691001300805
P value text
Or beta1.15
%95 Ci[1.08-1.22]
PlatformAffymetrix [334923]
CNVN
Mapped traitmultiple sclerosis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003885
Study accessionGCST000062
PubMed ID19525955
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19525955
StudyGenome-wide association study identifies new multiple sclerosis susceptibility loci on chromosomes 12 and 20.
Disease/TraitMultiple sclerosis
Initial sample1,618 European ancestry cases, 3,413 European ancestry controls
Replication sample2,256 European ancestry cases, 2,310 European ancestry controls
Region1p22.1
Chromosome idchr1
Chromosome position92838046
Reported geneRPL5, EVI5
Mapped geneFAM69A, RPL5
Upstream gene id
Downstream gene id
SNP gene ids388650, 6125
Upstream gene distance
Downstream gene distance
SNP risk allelers6604026-G
SNPsrs6604026
Merged0
SNP id current6604026
Contextintron_variant
Intergenic0
Allele frequency0.28
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta1.17
%95 Ci[NR]
PlatformIllumina [302098]
CNVN
Mapped traitmultiple sclerosis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003885
Study accessionGCST000425