SNP Detail For rs6601530
1.Mapping Information
Human SNP ID rs6601530
Human chromosome chr8
Human SNP position 10813762
Pig chromosome chr14
Pig SNP position 15454507
2.Annotation Information
PubMed ID21909108
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21909108
StudyMeta-analysis of genome-wide association studies from the CHARGE consortium identifies common variants associated with carotid intima media thickness and plaque.
Disease/TraitCarotid intima media thickness
Initial sampleUp to 31,211 European ancestry individuals
Replication sample10,553 European ancestry individuals, 687 Orcadian individuals
Region8p23.1
Chromosome idchr8
Chromosome position10813762
Reported genePINX1
Mapped genePINX1
Upstream gene id
Downstream gene id
SNP gene ids54984
Upstream gene distance
Downstream gene distance
SNP risk allelers6601530-G
SNPsrs6601530
Merged0
SNP id current6601530
Contextintron_variant
Intergenic0
Allele frequency0.45
P value0.00000002
Pvalue mlog7.69897000433601
P value text(cIMT)
Or beta0.0078
%95 Ci[0.01-0.01] unit increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitatherosclerosis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003914
Study accessionGCST001231