Human SNP ID | rs6601530 |
---|---|
Human chromosome | chr8 |
Human SNP position | 10813762 |
Pig chromosome | chr14 |
Pig SNP position | 15454507 |
PubMed ID | 21909108 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21909108 |
Study | Meta-analysis of genome-wide association studies from the CHARGE consortium identifies common variants associated with carotid intima media thickness and plaque. |
Disease/Trait | Carotid intima media thickness |
Initial sample | Up to 31,211 European ancestry individuals |
Replication sample | 10,553 European ancestry individuals, 687 Orcadian individuals |
Region | 8p23.1 |
Chromosome id | chr8 |
Chromosome position | 10813762 |
Reported gene | PINX1 |
Mapped gene | PINX1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 54984 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6601530-G |
SNPs | rs6601530 |
Merged | 0 |
SNP id current | 6601530 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.45 |
P value | 0.00000002 |
Pvalue mlog | 7.69897000433601 |
P value text | (cIMT) |
Or beta | 0.0078 |
%95 Ci | [0.01-0.01] unit increase |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | atherosclerosis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003914 |
Study accession | GCST001231 |