Human SNP ID | rs6601299 |
---|---|
Human chromosome | chr8 |
Human SNP position | 9327181 |
Pig chromosome | chr15 |
Pig SNP position | 63263777 |
PubMed ID | 21347282 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21347282 |
Study | Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project. |
Disease/Trait | HDL cholesterol |
Initial sample | 7,813 African American individuals |
Replication sample | 4,323 African American and Afro-Caribbean individuals |
Region | 8p23.1 |
Chromosome id | chr8 |
Chromosome position | 9327181 |
Reported gene | PPP1R3B |
Mapped gene | LOC157273 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 157273 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6601299-T |
SNPs | rs6601299 |
Merged | 0 |
SNP id current | 6601299 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.16 |
P value | 0.000000006 |
Pvalue mlog | 8.22184874961635 |
P value text | |
Or beta | 0.1407 |
%95 Ci | [0.094-0.187] unit decrease |
Platform | Affymetrix [~ 2740000] (imputed) |
CNV | N |
Mapped trait | high density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004612 |
Study accession | GCST000974 |