SNP Detail For rs6601299
1.Mapping Information
Human SNP ID rs6601299
Human chromosome chr8
Human SNP position 9327181
Pig chromosome chr15
Pig SNP position 63263777
2.Annotation Information
PubMed ID21347282
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21347282
StudyGenome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.
Disease/TraitHDL cholesterol
Initial sample7,813 African American individuals
Replication sample4,323 African American and Afro-Caribbean individuals
Region8p23.1
Chromosome idchr8
Chromosome position9327181
Reported genePPP1R3B
Mapped geneLOC157273
Upstream gene id
Downstream gene id
SNP gene ids157273
Upstream gene distance
Downstream gene distance
SNP risk allelers6601299-T
SNPsrs6601299
Merged0
SNP id current6601299
Contextintron_variant
Intergenic0
Allele frequency0.16
P value0.000000006
Pvalue mlog8.22184874961635
P value text
Or beta0.1407
%95 Ci[0.094-0.187] unit decrease
PlatformAffymetrix [~ 2740000] (imputed)
CNVN
Mapped traithigh density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004612
Study accessionGCST000974