SNP Detail For rs6599222
1.Mapping Information
Human SNP ID rs6599222
Human chromosome chr3
Human SNP position 38606571
Pig chromosome chr13
Pig SNP position 25579104
2.Annotation Information
PubMed ID21347284
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21347284
StudyGenome-wide association studies of the PR interval in African Americans.
Disease/TraitPR interval
Initial sample6,247 African American individuals
Replication sample2,022 African American individuals
Region3p22.2
Chromosome idchr3
Chromosome position38606571
Reported geneSCN5A
Mapped geneSCN5A
Upstream gene id
Downstream gene id
SNP gene ids6331
Upstream gene distance
Downstream gene distance
SNP risk allelers6599222-C
SNPsrs6599222
Merged0
SNP id current6599222
Contextintron_variant
Intergenic0
Allele frequency0.23
P value0.00000002
Pvalue mlog7.69897000433601
P value text
Or beta3.4
%95 Ci[2.20-4.60] unit increase
PlatformAffymetrix [2147483647] (imputed)
CNVN
Mapped traitPR interval
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004462
Study accessionGCST000971