SNP Detail For rs6598163
1.Mapping Information
Human SNP ID rs6598163
Human chromosome chr12
Human SNP position 131840694
Pig chromosome chr14
Pig SNP position 24959688
2.Annotation Information
PubMed ID22683712
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22683712
StudyGenome-wide association analysis identifies susceptibility loci for migraine without aura.
Disease/TraitMigraine
Initial sample2,326 European ancestry cases, 4,580 European ancestry controls
Replication sample2,508 European ancestry cases, 2,652 European ancestry controls
Region12q24.33
Chromosome idchr12
Chromosome position131840694
Reported geneMMP17
Mapped geneMMP17
Upstream gene id
Downstream gene id
SNP gene ids4326
Upstream gene distance
Downstream gene distance
SNP risk allelers6598163-G
SNPsrs6598163
Merged0
SNP id current6598163
Contextmissense_variant
Intergenic0
Allele frequency0.48
P value0.0000005
Pvalue mlog6.30102999566398
P value text
Or beta1.15
%95 Ci[1.09-1.21]
PlatformIllumina [1246388] (imputed)
CNVN
Mapped traitmigraine disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003821
Study accessionGCST001563