Human SNP ID | rs6596075 |
---|---|
Human chromosome | chr5 |
Human SNP position | 132406536 |
Pig chromosome | chr2 |
Pig SNP position | 140099843 |
PubMed ID | 17554300 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/17554300 |
Study | Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls. |
Disease/Trait | Crohn__s disease |
Initial sample | 1,748 European ancestry cases, 2,938 European ancestry controls |
Replication sample | (see Parkes 2007) |
Region | 5q31.1 |
Chromosome id | chr5 |
Chromosome position | 132406536 |
Reported gene | intergenic |
Mapped gene | SLC22A5 - C5orf56 |
Upstream gene id | 6584 |
Downstream gene id | 441108 |
SNP gene ids | |
Upstream gene distance | 10922 |
Downstream gene distance | 4237 |
SNP risk allele | rs6596075-C |
SNPs | rs6596075 |
Merged | 0 |
SNP id current | 6596075 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.17 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 1.55 |
%95 Ci | [1.00-2.39] |
Platform | Affymetrix [469557] |
CNV | N |
Mapped trait | Crohn__s disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000384 |
Study accession | GCST000042 |