SNP Detail For rs6596075
1.Mapping Information
Human SNP ID rs6596075
Human chromosome chr5
Human SNP position 132406536
Pig chromosome chr2
Pig SNP position 140099843
2.Annotation Information
PubMed ID17554300
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/17554300
StudyGenome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.
Disease/TraitCrohn__s disease
Initial sample1,748 European ancestry cases, 2,938 European ancestry controls
Replication sample(see Parkes 2007)
Region5q31.1
Chromosome idchr5
Chromosome position132406536
Reported geneintergenic
Mapped geneSLC22A5 - C5orf56
Upstream gene id6584
Downstream gene id441108
SNP gene ids
Upstream gene distance10922
Downstream gene distance4237
SNP risk allelers6596075-C
SNPsrs6596075
Merged0
SNP id current6596075
Contextupstream_gene_variant
Intergenic1
Allele frequency0.17
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta1.55
%95 Ci[1.00-2.39]
PlatformAffymetrix [469557]
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST000042