SNP Detail For rs6594713
1.Mapping Information
Human SNP ID rs6594713
Human chromosome chr5
Human SNP position 113379677
Pig chromosome chr2
Pig SNP position 120956468
2.Annotation Information
PubMed ID20308991
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/20308991
StudyIntegrative genome-wide association analysis of cytoarchitectural abnormalities in the prefrontal cortex of psychiatric disorders.
Disease/TraitBrain cytoarchitecture
Initial sample14 European ancestry bipolar cases, 15 European ancestry depression cases, 13 European ancestry schizophrenia cases, 14 European ancestry controls
Replication sampleNA
Region5q22.2
Chromosome idchr5
Chromosome position113379677
Reported geneMCC
Mapped geneMCC
Upstream gene id
Downstream gene id
SNP gene ids4163
Upstream gene distance
Downstream gene distance
SNP risk allelers6594713-?
SNPsrs6594713
Merged0
SNP id current6594713
Contextintron_variant
Intergenic0
Allele frequency0.21
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta
%95 Ci
PlatformAffymetrix [309531]
CNVN
Mapped traitprefrontal cortex cytoarchtiectural measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006913
Study accessionGCST000636