Human SNP ID | rs6594713 |
---|---|
Human chromosome | chr5 |
Human SNP position | 113379677 |
Pig chromosome | chr2 |
Pig SNP position | 120956468 |
PubMed ID | 20308991 |
---|---|
Journal | Mol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/20308991 |
Study | Integrative genome-wide association analysis of cytoarchitectural abnormalities in the prefrontal cortex of psychiatric disorders. |
Disease/Trait | Brain cytoarchitecture |
Initial sample | 14 European ancestry bipolar cases, 15 European ancestry depression cases, 13 European ancestry schizophrenia cases, 14 European ancestry controls |
Replication sample | NA |
Region | 5q22.2 |
Chromosome id | chr5 |
Chromosome position | 113379677 |
Reported gene | MCC |
Mapped gene | MCC |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 4163 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6594713-? |
SNPs | rs6594713 |
Merged | 0 |
SNP id current | 6594713 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.21 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Affymetrix [309531] |
CNV | N |
Mapped trait | prefrontal cortex cytoarchtiectural measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006913 |
Study accession | GCST000636 |