SNP Detail For rs6590334
1.Mapping Information
Human SNP ID rs6590334
Human chromosome chr11
Human SNP position 128533313
Pig chromosome chr9
Pig SNP position 61575773
2.Annotation Information
PubMed ID25903422
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/25903422
StudyGenome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.
Disease/TraitPsoriasis
Initial sample3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls
Replication sample5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls
Region11q24.3
Chromosome idchr11
Chromosome position128533313
Reported geneETS1
Mapped geneETS1
Upstream gene id
Downstream gene id
SNP gene ids2113
Upstream gene distance
Downstream gene distance
SNP risk allelers6590334-T
SNPsrs6590334
Merged0
SNP id current6590334
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000000002
Pvalue mlog8.69897000433601
P value text(EA)
Or beta1.14
%95 Ci[1.09-1.18]
PlatformIllumina [up to 4778154] (imputed)
CNVN
Mapped traitpsoriasis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000676
Study accessionGCST002874
PubMed ID25903422
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/25903422
StudyGenome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.
Disease/TraitPsoriasis
Initial sample3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls
Replication sample5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls
Region11q24.3
Chromosome idchr11
Chromosome position128533313
Reported geneETS1
Mapped geneETS1
Upstream gene id
Downstream gene id
SNP gene ids2113
Upstream gene distance
Downstream gene distance
SNP risk allelers6590334-T
SNPsrs6590334
Merged0
SNP id current6590334
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.00000001
Pvalue mlog8
P value text
Or beta1.1
%95 Ci[1.07-1.14]
PlatformIllumina [up to 4778154] (imputed)
CNVN
Mapped traitpsoriasis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000676
Study accessionGCST002874