SNP Detail For rs6590322
1.Mapping Information
Human SNP ID rs6590322
Human chromosome chr11
Human SNP position 128336515
Pig chromosome chr9
Pig SNP position 61345271
2.Annotation Information
PubMed ID19668339
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/19668339
StudyHippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer__s disease.
Disease/TraitHippocampal atrophy
Initial sample162 European ancestry cases, 192 European ancestry controls, 7 African American cases, 14 African American controls, 1 Asian ancestry cases, 3 Asian ancestry controls, 2 cases
Replication sampleNA
Region11q24.3
Chromosome idchr11
Chromosome position128336515
Reported geneintergenic
Mapped geneLOC105369564 - LOC105369566
Upstream gene id105369564
Downstream gene id105369566
SNP gene ids
Upstream gene distance95074
Downstream gene distance76505
SNP risk allelers6590322-?
SNPsrs6590322
Merged0
SNP id current6590322
Contextregulatory_region_variant
Intergenic1
Allele frequencyNR
P value0.000009
Pvalue mlog5.04575749056067
P value text
Or beta
%95 Ci
PlatformIllumina [516645]
CNVN
Mapped traithippocampal atrophy
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005039
Study accessionGCST000461