SNP Detail For rs6589964
1.Mapping Information
Human SNP ID rs6589964
Human chromosome chr11
Human SNP position 122999975
Pig chromosome chr9
Pig SNP position 55272838
2.Annotation Information
PubMed ID21102462
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21102462
StudyThirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.
Disease/TraitMenarche (age at onset)
Initial sample86,142 European ancestry female individuals, 557 Old Order Amish female individuals, 1,103 Erasmus Rucphen female individuals
Replication sampleUp to 12,813 European ancestry female individuals, 910 Val Borbera female individuals, 348 Orcadian female individuals, 338 Friuli Venezia Giulia female individuals, 322 Carlantino female individuals
Region11q24.1
Chromosome idchr11
Chromosome position122999975
Reported geneBSX
Mapped geneBSX - LOC341056
Upstream gene id390259
Downstream gene id341056
SNP gene ids
Upstream gene distance18304
Downstream gene distance17591
SNP risk allelers6589964-A
SNPsrs6589964
Merged0
SNP id current6589964
Contextintergenic_variant
Intergenic1
Allele frequency0.48
P value0.000000000002
Pvalue mlog11.698970004336
P value text
Or beta2.7
%95 Ci[1.92-3.48] week decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitage at menarche
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004703
Study accessionGCST000880