Human SNP ID | rs6589964 |
---|---|
Human chromosome | chr11 |
Human SNP position | 122999975 |
Pig chromosome | chr9 |
Pig SNP position | 55272838 |
PubMed ID | 21102462 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21102462 |
Study | Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies. |
Disease/Trait | Menarche (age at onset) |
Initial sample | 86,142 European ancestry female individuals, 557 Old Order Amish female individuals, 1,103 Erasmus Rucphen female individuals |
Replication sample | Up to 12,813 European ancestry female individuals, 910 Val Borbera female individuals, 348 Orcadian female individuals, 338 Friuli Venezia Giulia female individuals, 322 Carlantino female individuals |
Region | 11q24.1 |
Chromosome id | chr11 |
Chromosome position | 122999975 |
Reported gene | BSX |
Mapped gene | BSX - LOC341056 |
Upstream gene id | 390259 |
Downstream gene id | 341056 |
SNP gene ids | |
Upstream gene distance | 18304 |
Downstream gene distance | 17591 |
SNP risk allele | rs6589964-A |
SNPs | rs6589964 |
Merged | 0 |
SNP id current | 6589964 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.48 |
P value | 0.000000000002 |
Pvalue mlog | 11.698970004336 |
P value text | |
Or beta | 2.7 |
%95 Ci | [1.92-3.48] week decrease |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | age at menarche |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004703 |
Study accession | GCST000880 |