SNP Detail For rs6585827
1.Mapping Information
Human SNP ID rs6585827
Human chromosome chr10
Human SNP position 122406099
Pig chromosome chr14
Pig SNP position 143442460
2.Annotation Information
PubMed ID20189936
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20189936
StudyA genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.
Disease/TraitHeight
Initial sample19,633 Japanese ancestry individuals
Replication sampleNA
Region10q26.13
Chromosome idchr10
Chromosome position122406099
Reported genePLEKHA1
Mapped genePLEKHA1
Upstream gene id
Downstream gene id
SNP gene ids59338
Upstream gene distance
Downstream gene distance
SNP risk allelers6585827-G
SNPsrs6585827
Merged0
SNP id current6585827
Contextintron_variant
Intergenic0
Allele frequency0.43
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta0.05
%95 Ci[0.03-0.07] cm decrease
PlatformIllumina [420885]
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST000611