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SNP Detail For rs6583437
1.Mapping Information
| Human SNP ID | rs6583437 |
|---|---|
| Human chromosome | chr7 |
| Human SNP position | 50310671 |
| Pig chromosome | chr9 |
| Pig SNP position | 149812723 |
2.Annotation Information
| PubMed ID | 23382691 |
|---|---|
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 7p12.2 |
| Chromosome id | chr7 |
| Chromosome position | 50310671 |
| Reported gene | NR |
| Mapped gene | IKZF1 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 10320 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs6583437-G |
| SNPs | rs6583437 |
| Merged | 0 |
| SNP id current | 6583437 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.63670095951417 |
| P value | 0.000000002 |
| Pvalue mlog | 8.69897000433601 |
| P value text | (IGP2) |
| Or beta | 0.1929 |
| %95 Ci | [0.13-0.26] unit increase |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 7p12.2 |
| Chromosome id | chr7 |
| Chromosome position | 50310671 |
| Reported gene | NR |
| Mapped gene | IKZF1 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 10320 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs6583437-G |
| SNPs | rs6583437 |
| Merged | 0 |
| SNP id current | 6583437 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.636802753258427 |
| P value | 0.0000000007 |
| Pvalue mlog | 9.15490195998574 |
| P value text | (IGP42) |
| Or beta | 0.197 |
| %95 Ci | [0.13-0.26] unit increase |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 7p12.2 |
| Chromosome id | chr7 |
| Chromosome position | 50310671 |
| Reported gene | NR |
| Mapped gene | IKZF1 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 10320 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs6583437-G |
| SNPs | rs6583437 |
| Merged | 0 |
| SNP id current | 6583437 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.637533007630161 |
| P value | 0.00000004 |
| Pvalue mlog | 7.39794000867203 |
| P value text | (IGP46) |
| Or beta | 0.1744 |
| %95 Ci | [0.11-0.24] unit increase |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 7p12.2 |
| Chromosome id | chr7 |
| Chromosome position | 50310671 |
| Reported gene | NR |
| Mapped gene | IKZF1 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 10320 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs6583437-G |
| SNPs | rs6583437 |
| Merged | 0 |
| SNP id current | 6583437 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.636915159517426 |
| P value | 0.00000003 |
| Pvalue mlog | 7.52287874528033 |
| P value text | (IGP58) |
| Or beta | 0.1772 |
| %95 Ci | [0.11-0.24] unit decrease |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 7p12.2 |
| Chromosome id | chr7 |
| Chromosome position | 50310671 |
| Reported gene | NR |
| Mapped gene | IKZF1 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 10320 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs6583437-G |
| SNPs | rs6583437 |
| Merged | 0 |
| SNP id current | 6583437 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.636650594183445 |
| P value | 0.000000001 |
| Pvalue mlog | 9 |
| P value text | (IGP59) |
| Or beta | 0.1949 |
| %95 Ci | [0.13-0.26] unit decrease |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 7p12.2 |
| Chromosome id | chr7 |
| Chromosome position | 50310671 |
| Reported gene | NR |
| Mapped gene | IKZF1 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 10320 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs6583437-G |
| SNPs | rs6583437 |
| Merged | 0 |
| SNP id current | 6583437 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.637609347358997 |
| P value | 0.00000001 |
| Pvalue mlog | 8 |
| P value text | (IGP6) |
| Or beta | 0.1817 |
| %95 Ci | [0.12-0.24] unit increase |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 7p12.2 |
| Chromosome id | chr7 |
| Chromosome position | 50310671 |
| Reported gene | NR |
| Mapped gene | IKZF1 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 10320 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs6583437-G |
| SNPs | rs6583437 |
| Merged | 0 |
| SNP id current | 6583437 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.637881567834681 |
| P value | 0.000000005 |
| Pvalue mlog | 8.30102999566398 |
| P value text | (IGP60) |
| Or beta | 0.1862 |
| %95 Ci | [0.12-0.25] unit decrease |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 7p12.2 |
| Chromosome id | chr7 |
| Chromosome position | 50310671 |
| Reported gene | NR |
| Mapped gene | IKZF1 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 10320 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs6583437-G |
| SNPs | rs6583437 |
| Merged | 0 |
| SNP id current | 6583437 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.636609333927775 |
| P value | 0.000007 |
| Pvalue mlog | 5.15490195998574 |
| P value text | (IGP61) |
| Or beta | 0.143 |
| %95 Ci | [0.081-0.205] unit decrease |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
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