SNP Detail For rs6580083
1.Mapping Information
Human SNP ID rs6580083
Human chromosome chr5
Human SNP position 154486169
Pig chromosome chr16
Pig SNP position 74580762
2.Annotation Information
PubMed ID25035420
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25035420
StudyIdentification of three novel genetic variations associated with electrocardiographic traits (QRS duration and PR interval) in East Asians.
Disease/TraitQRS duration
Initial sample6,085 Korean ancestry individuals
Replication sample7,295 Japanese ancestry individuals
Region5q33.2
Chromosome idchr5
Chromosome position154486169
Reported geneHAND1, SAP30L
Mapped geneHAND1 - CIR1P1
Upstream gene id9421
Downstream gene id100131740
SNP gene ids
Upstream gene distance7905
Downstream gene distance73146
SNP risk allelers6580083-G
SNPsrs6580083
Merged0
SNP id current6580083
Contextupstream_gene_variant
Intergenic1
Allele frequency0.3
P value0.000001
Pvalue mlog6
P value text
Or beta0.85
%95 Ci[0.50-1.20] unit decrease
PlatformAffymetrix [2100000] (imputed)
CNVN
Mapped traitQRS duration
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005055
Study accessionGCST002533