Human SNP ID | rs6576443 |
---|---|
Human chromosome | chr15 |
Human SNP position | 25649511 |
Pig chromosome | chr1 |
Pig SNP position | 157536796 |
PubMed ID | 22610502 |
---|---|
Journal | Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22610502 |
Study | Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients. |
Disease/Trait | Immune reponse to smallpox (secreted IFN-alpha) |
Initial sample | Up to 512 European ancestry individuals, up to 199 African American individuals |
Replication sample | NA |
Region | 15q12 |
Chromosome id | chr15 |
Chromosome position | 25649511 |
Reported gene | ATP10A |
Mapped gene | LOC105370737 - ATP10A |
Upstream gene id | 105370737 |
Downstream gene id | 57194 |
SNP gene ids | |
Upstream gene distance | 70719 |
Downstream gene distance | 17283 |
SNP risk allele | rs6576443-A |
SNPs | rs6576443 |
Merged | 0 |
SNP id current | 6576443 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | |
P value | 0.000000006 |
Pvalue mlog | 8.22184874961635 |
P value text | (EA) |
Or beta | |
%95 Ci | |
Platform | Illumina [NR] |
CNV | N |
Mapped trait | response to vaccine, cytokine measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004645, http://www.ebi.ac.uk/efo/EFO_0004873 |
Study accession | GCST001538 |