SNP Detail For rs6576443
1.Mapping Information
Human SNP ID rs6576443
Human chromosome chr15
Human SNP position 25649511
Pig chromosome chr1
Pig SNP position 157536796
2.Annotation Information
PubMed ID22610502
JournalHum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22610502
StudyGenome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.
Disease/TraitImmune reponse to smallpox (secreted IFN-alpha)
Initial sampleUp to 512 European ancestry individuals, up to 199 African American individuals
Replication sampleNA
Region15q12
Chromosome idchr15
Chromosome position25649511
Reported geneATP10A
Mapped geneLOC105370737 - ATP10A
Upstream gene id105370737
Downstream gene id57194
SNP gene ids
Upstream gene distance70719
Downstream gene distance17283
SNP risk allelers6576443-A
SNPsrs6576443
Merged0
SNP id current6576443
Contextintergenic_variant
Intergenic1
Allele frequency
P value0.000000006
Pvalue mlog8.22184874961635
P value text(EA)
Or beta
%95 Ci
PlatformIllumina [NR]
CNVN
Mapped traitresponse to vaccine, cytokine measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004645, http://www.ebi.ac.uk/efo/EFO_0004873
Study accessionGCST001538