SNP Detail For rs6569474
1.Mapping Information
Human SNP ID rs6569474
Human chromosome chr6
Human SNP position 127172466
Pig chromosome chr1
Pig SNP position 39652676
2.Annotation Information
PubMed ID21909109
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21909109
StudyLarge-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.
Disease/TraitMetabolite levels
Initial sample12,545 Korean ancestry individuals
Replication sampleUp to 30,395 East Asian ancestry individuals
Region6q22.33
Chromosome idchr6
Chromosome position127172466
Reported geneRSPO3
Mapped geneRSPO3, LOC105377988
Upstream gene id
Downstream gene id
SNP gene ids84870, 105377988
Upstream gene distance
Downstream gene distance
SNP risk allelers6569474-A
SNPsrs6569474
Merged0
SNP id current6569474
Contextintron_variant
Intergenic0
Allele frequency0.47
P value0.00000001
Pvalue mlog8
P value text(BUN)
Or beta0.009
%95 Ci[0.0059-0.0121] mg/dL decrease
PlatformAffymetrix [~ 2200000] (imputed)
CNVN
Mapped traituric acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004761
Study accessionGCST001233