Human SNP ID | rs6569474 |
---|---|
Human chromosome | chr6 |
Human SNP position | 127172466 |
Pig chromosome | chr1 |
Pig SNP position | 39652676 |
PubMed ID | 21909109 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21909109 |
Study | Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits. |
Disease/Trait | Metabolite levels |
Initial sample | 12,545 Korean ancestry individuals |
Replication sample | Up to 30,395 East Asian ancestry individuals |
Region | 6q22.33 |
Chromosome id | chr6 |
Chromosome position | 127172466 |
Reported gene | RSPO3 |
Mapped gene | RSPO3, LOC105377988 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 84870, 105377988 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6569474-A |
SNPs | rs6569474 |
Merged | 0 |
SNP id current | 6569474 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.47 |
P value | 0.00000001 |
Pvalue mlog | 8 |
P value text | (BUN) |
Or beta | 0.009 |
%95 Ci | [0.0059-0.0121] mg/dL decrease |
Platform | Affymetrix [~ 2200000] (imputed) |
CNV | N |
Mapped trait | uric acid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004761 |
Study accession | GCST001233 |