SNP Detail For rs6563943
1.Mapping Information
Human SNP ID rs6563943
Human chromosome chr16
Human SNP position 83605730
Pig chromosome chr6
Pig SNP position 5361875
2.Annotation Information
PubMed ID20189936
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20189936
StudyA genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.
Disease/TraitHeight
Initial sample19,633 Japanese ancestry individuals
Replication sampleNA
Region16q23.3
Chromosome idchr16
Chromosome position83605730
Reported geneCDH13
Mapped geneCDH13
Upstream gene id
Downstream gene id
SNP gene ids1012
Upstream gene distance
Downstream gene distance
SNP risk allelers6563943-A
SNPsrs6563943
Merged0
SNP id current6563943
Contextintron_variant
Intergenic0
Allele frequency0.32
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta0.05
%95 Ci[0.03-0.07] cm increase
PlatformIllumina [420885]
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST000611