SNP Detail For rs6563695
1.Mapping Information
Human SNP ID rs6563695
Human chromosome chr13
Human SNP position 39329106
Pig chromosome chr11
Pig SNP position 14456191
2.Annotation Information
PubMed ID23551011
JournalAnn Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23551011
StudyGenome-wide association study of pre-eclampsia detects novel maternal single nucleotide polymorphisms and copy-number variants in subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) study cohort.
Disease/TraitPreeclampsia
Initial sample21 Afro-Caribbean cases, 1,010 Afro-Caribbean controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls
Replication sampleNA
Region13q13.3
Chromosome idchr13
Chromosome position39329106
Reported geneLHFP
Mapped geneLOC105370168 - LHFP
Upstream gene id105370168
Downstream gene id10186
SNP gene ids
Upstream gene distance101200
Downstream gene distance13786
SNP risk allelers6563695-?
SNPsrs6563695
Merged0
SNP id current6563695
Contextregulatory_region_variant
Intergenic1
Allele frequencyNR
P value0.000005
Pvalue mlog5.30102999566398
P value text(EA)
Or beta3.65
%95 Ci[2.09-6.36]
PlatformIllumina [2485249] (imputed)
CNVN
Mapped traitpreeclampsia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000668
Study accessionGCST001949