SNP Detail For rs6561030
1.Mapping Information
Human SNP ID rs6561030
Human chromosome chr13
Human SNP position 42057583
Pig chromosome chr11
Pig SNP position 25656394
2.Annotation Information
PubMed ID20189936
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20189936
StudyA genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.
Disease/TraitHeight
Initial sample19,633 Japanese ancestry individuals
Replication sampleNA
Region13q14.11
Chromosome idchr13
Chromosome position42057583
Reported geneDGKH
Mapped geneDGKH
Upstream gene id
Downstream gene id
SNP gene ids160851
Upstream gene distance
Downstream gene distance
SNP risk allelers6561030-A
SNPsrs6561030
Merged0
SNP id current6561030
Contextintron_variant
Intergenic0
Allele frequency0.28
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta0.05
%95 Ci[0.03-0.07] cm decrease
PlatformIllumina [420885]
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST000611