SNP Detail For rs6558872
1.Mapping Information
Human SNP ID rs6558872
Human chromosome chr8
Human SNP position 4380617
Pig chromosome chr15
Pig SNP position 40689157
2.Annotation Information
PubMed ID24166486
JournalSci Rep
Linkwww.ncbi.nlm.nih.gov/pubmed/24166486
StudyGWAS meta analysis identifies TSNARE1 as a novel Schizophrenia / Bipolar susceptibility locus.
Disease/TraitSchizophrenia, schizoaffective disorder or bipolar disorder
Initial sample11,985 European, African American, Asian, other and unknown ancestry schizophrenia cases, 377 European, African American, Asian, other and unknown ancestry schizoaffective disorder cases, 1,032 bipolar disorder cases, 34,676 European, African American, As
Replication sample2652 individuals
Region8p23.2
Chromosome idchr8
Chromosome position4380617
Reported geneCSMD1
Mapped geneCSMD1
Upstream gene id
Downstream gene id
SNP gene ids64478
Upstream gene distance
Downstream gene distance
SNP risk allelers6558872-?
SNPsrs6558872
Merged0
SNP id current6558872
Contextintron_variant
Intergenic0
Allele frequency0.571
P value0.00000005
Pvalue mlog7.30102999566398
P value text
Or beta
%95 Ci
PlatformAffymetrix, Illumina [NR] (imputed)
CNVN
Mapped traitschizophrenia, bipolar disorder, schizoaffective disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692, http://www.ebi.ac.uk/efo/EFO_0000289, http://www.ebi.ac.uk/efo/EFO_0005411
Study accessionGCST002254