SNP Detail For rs6558407
1.Mapping Information
Human SNP ID rs6558407
Human chromosome chr8
Human SNP position 143921326
Pig chromosome chr12
Pig SNP position 5379608
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1
Initial sample10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals
Replication sampleNA
Region8q24.3
Chromosome idchr8
Chromosome position143921326
Reported genePLEC
Mapped genePLEC
Upstream gene id
Downstream gene id
SNP gene ids5339
Upstream gene distance
Downstream gene distance
SNP risk allelers6558407-T
SNPsrs6558407
Merged0
SNP id current6558407
Contextmissense_variant
Intergenic0
Allele frequency0.377
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta0.045
%95 CiNR unit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitforced expiratory volume, response to bronchodilator
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004314, http://purl.obolibrary.org/obo/GO_0097366
Study accessionGCST003262