Human SNP ID | rs6555855 |
---|---|
Human chromosome | chr5 |
Human SNP position | 169322733 |
Pig chromosome | chr16 |
Pig SNP position | 59108393 |
PubMed ID | 25231870 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/25231870 |
Study | Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche. |
Disease/Trait | Menarche (age at onset) |
Initial sample | Up to 182,413 European ancestry females |
Replication sample | NA |
Region | 5q35.1 |
Chromosome id | chr5 |
Chromosome position | 169322733 |
Reported gene | SLIT3 |
Mapped gene | SLIT3 - LOC105377714 |
Upstream gene id | 6586 |
Downstream gene id | 105377714 |
SNP gene ids | |
Upstream gene distance | 21604 |
Downstream gene distance | 135703 |
SNP risk allele | rs6555855-G |
SNPs | rs6555855 |
Merged | 0 |
SNP id current | 6555855 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.23 |
P value | 0.000000002 |
Pvalue mlog | 8.69897000433601 |
P value text | |
Or beta | 0.04 |
%95 Ci | [0.028-0.052] unit increase |
Platform | Affymetrix, Illumina [2441815] (imputed) |
CNV | N |
Mapped trait | age at menarche |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004703 |
Study accession | GCST002541 |