SNP Detail For rs6555855
1.Mapping Information
Human SNP ID rs6555855
Human chromosome chr5
Human SNP position 169322733
Pig chromosome chr16
Pig SNP position 59108393
2.Annotation Information
PubMed ID25231870
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25231870
StudyParent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.
Disease/TraitMenarche (age at onset)
Initial sampleUp to 182,413 European ancestry females
Replication sampleNA
Region5q35.1
Chromosome idchr5
Chromosome position169322733
Reported geneSLIT3
Mapped geneSLIT3 - LOC105377714
Upstream gene id6586
Downstream gene id105377714
SNP gene ids
Upstream gene distance21604
Downstream gene distance135703
SNP risk allelers6555855-G
SNPsrs6555855
Merged0
SNP id current6555855
Contextintergenic_variant
Intergenic1
Allele frequency0.23
P value0.000000002
Pvalue mlog8.69897000433601
P value text
Or beta0.04
%95 Ci[0.028-0.052] unit increase
PlatformAffymetrix, Illumina [2441815] (imputed)
CNVN
Mapped traitage at menarche
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004703
Study accessionGCST002541