Human SNP ID | rs6549438 |
---|---|
Human chromosome | chr3 |
Human SNP position | 72112082 |
Pig chromosome | chr13 |
Pig SNP position | 59161012 |
PubMed ID | 23793025 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23793025 |
Study | Genome-wide meta-analysis identifies new susceptibility loci for migraine. |
Disease/Trait | Migraine - clinic-based |
Initial sample | 5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls |
Replication sample | NA |
Region | 3p13 |
Chromosome id | chr3 |
Chromosome position | 72112082 |
Reported gene | intergenic |
Mapped gene | LINC00877 - LINC00870 |
Upstream gene id | 285286 |
Downstream gene id | 201617 |
SNP gene ids | |
Upstream gene distance | 11627 |
Downstream gene distance | 39175 |
SNP risk allele | rs6549438-? |
SNPs | rs6549438 |
Merged | 0 |
SNP id current | 6549438 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.52 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | |
Or beta | 1.12 |
%95 Ci | [1.06-1.18] |
Platform | Affymetrix, Illumina [~ 2300000] (imputed) |
CNV | N |
Mapped trait | migraine disorder |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003821 |
Study accession | GCST002079 |