SNP Detail For rs6549438
1.Mapping Information
Human SNP ID rs6549438
Human chromosome chr3
Human SNP position 72112082
Pig chromosome chr13
Pig SNP position 59161012
2.Annotation Information
PubMed ID23793025
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23793025
StudyGenome-wide meta-analysis identifies new susceptibility loci for migraine.
Disease/TraitMigraine - clinic-based
Initial sample5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls
Replication sampleNA
Region3p13
Chromosome idchr3
Chromosome position72112082
Reported geneintergenic
Mapped geneLINC00877 - LINC00870
Upstream gene id285286
Downstream gene id201617
SNP gene ids
Upstream gene distance11627
Downstream gene distance39175
SNP risk allelers6549438-?
SNPsrs6549438
Merged0
SNP id current6549438
Contextintron_variant
Intergenic1
Allele frequency0.52
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta1.12
%95 Ci[1.06-1.18]
PlatformAffymetrix, Illumina [~ 2300000] (imputed)
CNVN
Mapped traitmigraine disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003821
Study accessionGCST002079