Human SNP ID | rs6548123 |
---|---|
Human chromosome | chr2 |
Human SNP position | 2221629 |
Pig chromosome | chr3 |
Pig SNP position | 141256730 |
PubMed ID | 25574825 |
---|---|
Journal | Am J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25574825 |
Study | Genome-wide Comparative Analysis of Atopic Dermatitis and Psoriasis Gives Insight into Opposing Genetic Mechanisms. |
Disease/Trait | Inflammatory skin disease |
Initial sample | 2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls |
Replication sample | NA |
Region | 2p25.3 |
Chromosome id | chr2 |
Chromosome position | 2221629 |
Reported gene | MYT1L |
Mapped gene | MYT1L |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 23040 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6548123-? |
SNPs | rs6548123 |
Merged | 0 |
SNP id current | 6548123 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.00000006 |
Pvalue mlog | 7.22184874961635 |
P value text | (Opposed) |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [~ 5200000] |
CNV | N |
Mapped trait | atopic eczema, psoriasis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000274, http://www.ebi.ac.uk/efo/EFO_0000676 |
Study accession | GCST002740 |