SNP Detail For rs6548123
1.Mapping Information
Human SNP ID rs6548123
Human chromosome chr2
Human SNP position 2221629
Pig chromosome chr3
Pig SNP position 141256730
2.Annotation Information
PubMed ID25574825
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25574825
StudyGenome-wide Comparative Analysis of Atopic Dermatitis and Psoriasis Gives Insight into Opposing Genetic Mechanisms.
Disease/TraitInflammatory skin disease
Initial sample2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls
Replication sampleNA
Region2p25.3
Chromosome idchr2
Chromosome position2221629
Reported geneMYT1L
Mapped geneMYT1L
Upstream gene id
Downstream gene id
SNP gene ids23040
Upstream gene distance
Downstream gene distance
SNP risk allelers6548123-?
SNPsrs6548123
Merged0
SNP id current6548123
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.00000006
Pvalue mlog7.22184874961635
P value text(Opposed)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 5200000]
CNVN
Mapped traitatopic eczema, psoriasis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000274, http://www.ebi.ac.uk/efo/EFO_0000676
Study accessionGCST002740