SNP Detail For rs6547853
1.Mapping Information
Human SNP ID rs6547853
Human chromosome chr2
Human SNP position 28423934
Pig chromosome chr3
Pig SNP position 117500503
2.Annotation Information
PubMed ID21980299
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21980299
StudyA genome-wide meta-analysis of six type 1 diabetes cohorts identifies multiple associated loci.
Disease/TraitType 1 diabetes
Initial sample9,934 European ancestry cases, 16,956 European ancestry controls
Replication sample1,120 European ancestry affected trios
Region2p23.2
Chromosome idchr2
Chromosome position28423934
Reported geneFOSL2
Mapped geneFOSL2 - LOC102723530
Upstream gene id2355
Downstream gene id102723530
SNP gene ids
Upstream gene distance6622
Downstream gene distance24586
SNP risk allelers6547853-?
SNPsrs6547853
Merged0
SNP id current6547853
Contextupstream_gene_variant
Intergenic1
Allele frequency0.6
P value0.0000008
Pvalue mlog6.09691001300805
P value text
Or beta1.19
%95 Ci[NR]
PlatformAffymetrix, Illumina [~ 2540000] (imputed)
CNVN
Mapped traittype I diabetes mellitus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001359
Study accessionGCST001255