SNP Detail For rs6546886
1.Mapping Information
Human SNP ID rs6546886
Human chromosome chr2
Human SNP position 74018650
Pig chromosome chr3
Pig SNP position 72148868
2.Annotation Information
PubMed ID21546767
JournalAm J Nephrol
Linkwww.ncbi.nlm.nih.gov/pubmed/21546767
StudyGenome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.
Disease/TraitDialysis-related mortality
Initial sample610 African American type 2 diabetes cases
Replication sampleNA
Region2p13.1
Chromosome idchr2
Chromosome position74018650
Reported geneDGUOK, TET3
Mapped geneTET3
Upstream gene id
Downstream gene id
SNP gene ids200424
Upstream gene distance
Downstream gene distance
SNP risk allelers6546886-?
SNPsrs6546886
Merged0
SNP id current6546886
Contextintron_variant
Intergenic0
Allele frequency0.29
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta2.13
%95 Ci[1.55-2.93]
PlatformAffymetrix [832357]
CNVN
Mapped traitchronic kidney disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003884
Study accessionGCST001066