PigVar
Overview
Pig SNPs
SNP Table
SNP Hit on Gene
SNP Coding
SNP lincRNA
Search SNPs by Region
Browse on Chromosome
SV
Positive Selection
Help
Manual
Pipeline
Data Statistics
Contact Us
Download
SNP Detail For rs6546847
1.Mapping Information
| Human SNP ID | rs6546847 |
|---|---|
| Human chromosome | chr2 |
| Human SNP position | 73558231 |
| Pig chromosome | chr3 |
| Pig SNP position | 72498686 |
2.Annotation Information
| PubMed ID | 24586186 |
|---|---|
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/24586186 |
| Study | Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links. |
| Disease/Trait | Urinary metabolites (H-NMR features) |
| Initial sample | 835 European ancestry individuals |
| Replication sample | 601 Brazilian individuals |
| Region | 2p13.1 |
| Chromosome id | chr2 |
| Chromosome position | 73558231 |
| Reported gene | ALMS1 |
| Mapped gene | ALMS1 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 7840 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs6546847-A |
| SNPs | rs6546847 |
| Merged | 0 |
| SNP id current | 6546847 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.22 |
| P value | 5E-161 |
| Pvalue mlog | 160.301029995663 |
| P value text | (2.0375, N-Acetylated compunds) |
| Or beta | 0.91 |
| %95 Ci | [NR] unit increase |
| Platform | Illumina [713870] (imputed) |
| CNV | N |
| Mapped trait | urinary metabolite measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005116 |
| Study accession | GCST002364 |
| PubMed ID | 24586186 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/24586186 |
| Study | Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links. |
| Disease/Trait | Urinary metabolites (H-NMR features) |
| Initial sample | 835 European ancestry individuals |
| Replication sample | 601 Brazilian individuals |
| Region | 2p13.1 |
| Chromosome id | chr2 |
| Chromosome position | 73558231 |
| Reported gene | ALMS1 |
| Mapped gene | ALMS1 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 7840 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs6546847-A |
| SNPs | rs6546847 |
| Merged | 0 |
| SNP id current | 6546847 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.22 |
| P value | 0.00000000000000001 |
| Pvalue mlog | 17 |
| P value text | (2.7875, N-Acetylated compunds) |
| Or beta | 0.34 |
| %95 Ci | [NR] unit increase |
| Platform | Illumina [713870] (imputed) |
| CNV | N |
| Mapped trait | urinary metabolite measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005116 |
| Study accession | GCST002364 |
|
Kunming Institute of Zoology, CAS
and Xi'an University of Technology ©2014-2017 All Rights Reserved.
|
|