SNP Detail For rs6544311
1.Mapping Information
Human SNP ID rs6544311
Human chromosome chr2
Human SNP position 40126137
Pig chromosome chr3
Pig SNP position 106324959
2.Annotation Information
PubMed ID24952745
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24952745
StudyGenetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.
Disease/TraitQT interval
Initial sampleUp to 70,389 European ancestry individuals, up to 672 Orcadian individuals
Replication sampleUp to 33,316 European ancestry individuals
Region2p22.1
Chromosome idchr2
Chromosome position40126137
Reported geneSLC8A1
Mapped geneSLC8A1-AS1, SLC8A1
Upstream gene id
Downstream gene id
SNP gene ids100128590, 6546
Upstream gene distance
Downstream gene distance
SNP risk allelers6544311-A
SNPsrs6544311
Merged0
SNP id current6544311
Contextintron_variant
Intergenic0
Allele frequency0.376
P value0.0000000002
Pvalue mlog9.69897000433601
P value text
Or beta0.65
%95 Ci[0.45-0.85] unit increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitQT interval
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004682
Study accessionGCST002500