Human SNP ID | rs6544311 |
---|---|
Human chromosome | chr2 |
Human SNP position | 40126137 |
Pig chromosome | chr3 |
Pig SNP position | 106324959 |
PubMed ID | 24952745 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24952745 |
Study | Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization. |
Disease/Trait | QT interval |
Initial sample | Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals |
Replication sample | Up to 33,316 European ancestry individuals |
Region | 2p22.1 |
Chromosome id | chr2 |
Chromosome position | 40126137 |
Reported gene | SLC8A1 |
Mapped gene | SLC8A1-AS1, SLC8A1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 100128590, 6546 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6544311-A |
SNPs | rs6544311 |
Merged | 0 |
SNP id current | 6544311 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.376 |
P value | 0.0000000002 |
Pvalue mlog | 9.69897000433601 |
P value text | |
Or beta | 0.65 |
%95 Ci | [0.45-0.85] unit increase |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | QT interval |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004682 |
Study accession | GCST002500 |