SNP Detail For rs6539267
1.Mapping Information
Human SNP ID rs6539267
Human chromosome chr12
Human SNP position 106391776
Pig chromosome chr5
Pig SNP position 14002562
2.Annotation Information
PubMed ID22889924
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/22889924
StudyGenome-wide association study of Tourette__s syndrome.
Disease/TraitTourette syndrome
Initial sample778 European ancestry cases, 4,414 European ancestry controls, 242 Ashkenazi Jewish cases, 354 Ashkenazi Jewish controls, 265 French Canadian founder cases, 196 French Canadian founder controls
Replication sample211 Latin American cases, 285 Latin American controls
Region12q23.3
Chromosome idchr12
Chromosome position106391776
Reported genePOLR3B, TCP11L2, FLJ45508
Mapped genePOLR3B
Upstream gene id
Downstream gene id
SNP gene ids55703
Upstream gene distance
Downstream gene distance
SNP risk allelers6539267-T
SNPsrs6539267
Merged0
SNP id current6539267
Contextintron_variant
Intergenic0
Allele frequency0.69
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta1.27
%95 Ci[NR]
PlatformIllumina [484295]
CNVN
Mapped traitTourette syndrome
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004895
Study accessionGCST001635