SNP Detail For rs6538761
1.Mapping Information
Human SNP ID rs6538761
Human chromosome chr12
Human SNP position 97040442
Pig chromosome chr5
Pig SNP position 91083097
2.Annotation Information
PubMed ID24189344
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/24189344
StudyCommon genetic variants on 1p13.2 associate with risk of autism.
Disease/TraitAutism
Initial sample275 Chinese ancestry cases and 550 Chinese ancestry controls from 275 trios, 136 Chinese ancestry cases, 984 Chinese ancestry controls
Replication sample1,299 European ancestry cases and 2,598 European ancestry controls from 1,299 trios
Region12q23.1
Chromosome idchr12
Chromosome position97040442
Reported geneNEDD1
Mapped geneLOC105369926 - LOC105369928
Upstream gene id105369926
Downstream gene id105369928
SNP gene ids
Upstream gene distance15154
Downstream gene distance144640
SNP risk allelers6538761-A
SNPsrs6538761
Merged0
SNP id current6538761
Contextintron_variant
Intergenic1
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.24
%95 Ci[NR]
PlatformIllumina [702234] (imputed)
CNVN
Mapped traitautism
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003758
Study accessionGCST002268