Human SNP ID | rs6538678 |
---|---|
Human chromosome | chr12 |
Human SNP position | 95867790 |
Pig chromosome | chr5 |
Pig SNP position | 91816658 |
PubMed ID | 24925725 |
---|---|
Journal | J Am Soc Nephrol |
Link | www.ncbi.nlm.nih.gov/pubmed/24925725 |
Study | Lupus nephritis susceptibility Loci in women with systemic lupus erythematosus. |
Disease/Trait | Lupus nephritis in systemic lupus erythematosus |
Initial sample | 588 European ancestry cases, 1,412 European ancestry controls |
Replication sample | NA |
Region | 12q23.1 |
Chromosome id | chr12 |
Chromosome position | 95867790 |
Reported gene | CCDC38, FLJ40089 |
Mapped gene | CCDC38 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 120935 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6538678-A |
SNPs | rs6538678 |
Merged | 0 |
SNP id current | 6538678 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | (Additive) |
Or beta | 1.57 |
%95 Ci | [1.30-1.88] |
Platform | Affymetrix, Illumina [1621689] (imputed) |
CNV | N |
Mapped trait | systemic lupus erythematosus, lupus nephritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002690, http://www.ebi.ac.uk/efo/EFO_0005761 |
Study accession | GCST002479 |