SNP Detail For rs6538678
1.Mapping Information
Human SNP ID rs6538678
Human chromosome chr12
Human SNP position 95867790
Pig chromosome chr5
Pig SNP position 91816658
2.Annotation Information
PubMed ID24925725
JournalJ Am Soc Nephrol
Linkwww.ncbi.nlm.nih.gov/pubmed/24925725
StudyLupus nephritis susceptibility Loci in women with systemic lupus erythematosus.
Disease/TraitLupus nephritis in systemic lupus erythematosus
Initial sample588 European ancestry cases, 1,412 European ancestry controls
Replication sampleNA
Region12q23.1
Chromosome idchr12
Chromosome position95867790
Reported geneCCDC38, FLJ40089
Mapped geneCCDC38
Upstream gene id
Downstream gene id
SNP gene ids120935
Upstream gene distance
Downstream gene distance
SNP risk allelers6538678-A
SNPsrs6538678
Merged0
SNP id current6538678
Contextintron_variant
Intergenic0
Allele frequency
P value0.000002
Pvalue mlog5.69897000433601
P value text(Additive)
Or beta1.57
%95 Ci[1.30-1.88]
PlatformAffymetrix, Illumina [1621689] (imputed)
CNVN
Mapped traitsystemic lupus erythematosus, lupus nephritis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002690, http://www.ebi.ac.uk/efo/EFO_0005761
Study accessionGCST002479