Human SNP ID | rs653465 |
---|---|
Human chromosome | chr3 |
Human SNP position | 27302153 |
Pig chromosome | chr13 |
Pig SNP position | 15397777 |
PubMed ID | 24493630 |
---|---|
Journal | Cancer Epidemiol Biomarkers Prev |
Link | www.ncbi.nlm.nih.gov/pubmed/24493630 |
Study | A genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age. |
Disease/Trait | Breast cancer (early onset) |
Initial sample | 3,523 European ancestry young female cases, 2,702 European ancestry young female controls |
Replication sample | 3,470 European ancestry young female cases, 5,475 European ancestry young female controls |
Region | 3p24.1 |
Chromosome id | chr3 |
Chromosome position | 27302153 |
Reported gene | SLC4A7 |
Mapped gene | NEK10 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 152110 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs653465-? |
SNPs | rs653465 |
Merged | 0 |
SNP id current | 653465 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.54 |
P value | 0.000000000005 |
Pvalue mlog | 11.3010299956639 |
P value text | |
Or beta | 1.18 |
%95 Ci | [1.12-1.23] |
Platform | Illumina [1265548] (imputed) |
CNV | N |
Mapped trait | breast carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000305 |
Study accession | GCST002346 |