SNP Detail For rs653465
1.Mapping Information
Human SNP ID rs653465
Human chromosome chr3
Human SNP position 27302153
Pig chromosome chr13
Pig SNP position 15397777
2.Annotation Information
PubMed ID24493630
JournalCancer Epidemiol Biomarkers Prev
Linkwww.ncbi.nlm.nih.gov/pubmed/24493630
StudyA genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age.
Disease/TraitBreast cancer (early onset)
Initial sample3,523 European ancestry young female cases, 2,702 European ancestry young female controls
Replication sample3,470 European ancestry young female cases, 5,475 European ancestry young female controls
Region3p24.1
Chromosome idchr3
Chromosome position27302153
Reported geneSLC4A7
Mapped geneNEK10
Upstream gene id
Downstream gene id
SNP gene ids152110
Upstream gene distance
Downstream gene distance
SNP risk allelers653465-?
SNPsrs653465
Merged0
SNP id current653465
Contextintron_variant
Intergenic0
Allele frequency0.54
P value0.000000000005
Pvalue mlog11.3010299956639
P value text
Or beta1.18
%95 Ci[1.12-1.23]
PlatformIllumina [1265548] (imputed)
CNVN
Mapped traitbreast carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000305
Study accessionGCST002346