SNP Detail For rs6533014
1.Mapping Information
Human SNP ID rs6533014
Human chromosome chr4
Human SNP position 102428583
Pig chromosome chr8
Pig SNP position 127872803
2.Annotation Information
PubMed ID24204828
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/24204828
StudyGenome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.
Disease/TraitHomeostasis model assessment of beta-cell function (interaction)
Initial sample820 European ancestry individuals
Replication sampleNA
Region4q24
Chromosome idchr4
Chromosome position102428583
Reported geneLOC100133085, NFKB1
Mapped geneLOC105377621
Upstream gene id
Downstream gene id
SNP gene ids105377621
Upstream gene distance
Downstream gene distance
SNP risk allelers6533014-A
SNPsrs6533014
Merged0
SNP id current6533014
Contextintron_variant
Intergenic0
Allele frequency0.479
P value0.000007
Pvalue mlog5.15490195998574
P value text(n-6 PUFA)
Or beta
%95 Ci
PlatformAffymetrix [590000]
CNVN
Mapped traitHOMA-B
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004469
Study accessionGCST002251