Human SNP ID | rs652888 |
---|---|
Human chromosome | chr6 |
Human SNP position | 31883457 |
Pig chromosome | chr7 |
Pig SNP position | 27830732 |
PubMed ID | 23760081 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23760081 |
Study | A genome-wide association study identified new variants associated with the risk of chronic hepatitis B. |
Disease/Trait | Chronic hepatitis B infection |
Initial sample | 400 Korean ancestry cases, 1,000 Korean ancestry controls |
Replication sample | 971 Korean ancestry cases, 1,938 Korean ancestry controls |
Region | 6p21.33 |
Chromosome id | chr6 |
Chromosome position | 31883457 |
Reported gene | EHMT2 |
Mapped gene | EHMT2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 10919 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs652888-? |
SNPs | rs652888 |
Merged | 0 |
SNP id current | 652888 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.0000000000007 |
Pvalue mlog | 12.1549019599857 |
P value text | |
Or beta | 1.38 |
%95 Ci | [1.22-1.57] |
Platform | Illumina [719265] |
CNV | N |
Mapped trait | hepatitis B infection |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004197 |
Study accession | GCST002068 |
PubMed ID | 21323541 |
Journal | N Engl J Med |
Link | www.ncbi.nlm.nih.gov/pubmed/21323541 |
Study | Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy. |
Disease/Trait | Idiopathic membranous nephropathy |
Initial sample | 556 European ancestry cases, 2,338 European ancestry controls |
Replication sample | NA |
Region | 6p21.33 |
Chromosome id | chr6 |
Chromosome position | 31883457 |
Reported gene | EHMT2 |
Mapped gene | EHMT2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 10919 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs652888-C |
SNPs | rs652888 |
Merged | 0 |
SNP id current | 652888 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.2021 |
P value | 3E-46 |
Pvalue mlog | 45.5228787452803 |
P value text | |
Or beta | 2.71 |
%95 Ci | [NR] |
Platform | Illumina [242824] |
CNV | N |
Mapped trait | membranous glomerulonephritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004254 |
Study accession | GCST000984 |
PubMed ID | 25802187 |
Journal | Hepatology |
Link | www.ncbi.nlm.nih.gov/pubmed/25802187 |
Study | Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B. |
Disease/Trait | Chronic hepatitis B infection |
Initial sample | 2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls |
Replication sample | 6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls |
Region | 6p21.33 |
Chromosome id | chr6 |
Chromosome position | 31883457 |
Reported gene | EHMT2 |
Mapped gene | EHMT2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 10919 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs652888-G |
SNPs | rs652888 |
Merged | 0 |
SNP id current | 652888 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.24 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | |
Or beta | 1.14 |
%95 Ci | [1.08-1.19] |
Platform | Illumina [3680900] (imputed) |
CNV | N |
Mapped trait | chronic hepatitis B infection |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004239 |
Study accession | GCST002879 |