SNP Detail For rs652260
1.Mapping Information
Human SNP ID rs652260
Human chromosome chr19
Human SNP position 7835676
Pig chromosome chr2
Pig SNP position 71747960
2.Annotation Information
PubMed ID25231870
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25231870
StudyParent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.
Disease/TraitMenarche (age at onset)
Initial sampleUp to 182,413 European ancestry females
Replication sampleNA
Region19p13.2
Chromosome idchr19
Chromosome position7835676
Reported geneEVI5L, RETN
Mapped geneEVI5L
Upstream gene id
Downstream gene id
SNP gene ids115704
Upstream gene distance
Downstream gene distance
SNP risk allelers652260-T
SNPsrs652260
Merged0
SNP id current652260
Contextintron_variant
Intergenic0
Allele frequency0.54
P value0.00000001
Pvalue mlog8
P value text
Or beta0.03
%95 Ci[0.02-0.04] unit increase
PlatformAffymetrix, Illumina [2441815] (imputed)
CNVN
Mapped traitage at menarche
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004703
Study accessionGCST002541