SNP Detail For rs6517656
1.Mapping Information
Human SNP ID rs6517656
Human chromosome chr21
Human SNP position 41211811
Pig chromosome chr13
Pig SNP position 214787719
2.Annotation Information
PubMed ID23903356
JournalDiabetes
Linkwww.ncbi.nlm.nih.gov/pubmed/23903356
StudyIdentification of HKDC1 and BACE2 as genes influencing glycemic traits during pregnancy through genome-wide association studies.
Disease/TraitGlycemic traits (pregnancy)
Initial sample1,367 European ancestry individuals, 817 Hispanic individuals, 1,075 Afro-Caribbean individuals, 1,178 Thai ancestry individuals
Replication sample2,798 European ancestry individuals, 228 French Canadian founder population individuals
Region21q22.3
Chromosome idchr21
Chromosome position41211811
Reported geneBACE2, PLAC4, C21orf130, FAM3B
Mapped geneBACE2
Upstream gene id
Downstream gene id
SNP gene ids25825
Upstream gene distance
Downstream gene distance
SNP risk allelers6517656-G
SNPsrs6517656
Merged0
SNP id current6517656
Contextintron_variant
Intergenic0
Allele frequency0.839
P value0.0000000000000006
Pvalue mlog15.2218487496163
P value text(FCP)
Or beta0.0402
%95 Ci[NR] unit increase
PlatformIllumina [up to 945994] (imputed)
CNVN
Mapped traitC-peptide measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005187
Study accessionGCST002110