SNP Detail For rs6509942
1.Mapping Information
Human SNP ID rs6509942
Human chromosome chr19
Human SNP position 30064044
Pig chromosome chr6
Pig SNP position 35511480
2.Annotation Information
PubMed ID24324551
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/24324551
StudyGenome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.
Disease/TraitAntibody status in Tripanosoma cruzi seropositivity
Initial sample580 Brazilian ancestry individuals
Replication sampleNA
Region19q12
Chromosome idchr19
Chromosome position30064044
Reported geneNR
Mapped geneTAF9P3 - ZNF536
Upstream gene id163088
Downstream gene id9745
SNP gene ids
Upstream gene distance25654
Downstream gene distance161000
SNP risk allelers6509942-?
SNPsrs6509942
Merged0
SNP id current6509942
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta
%95 Ci
PlatformAffymetrix [5486770] (imputed)
CNVN
Mapped traitantibody measurement, Trypanosoma cruzi seropositivity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004556, http://www.ebi.ac.uk/efo/EFO_0005530
Study accessionGCST002280