SNP Detail For rs6503695
1.Mapping Information
Human SNP ID rs6503695
Human chromosome chr17
Human SNP position 42347515
Pig chromosome chr12
Pig SNP position 24576628
2.Annotation Information
PubMed ID26192919
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26192919
StudyAssociation analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Disease/TraitCrohn__s disease
Initial sample5,956 European ancestry cases, 14,927 European ancestry controls
Replication sample14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls
Region17q21.2
Chromosome idchr17
Chromosome position42347515
Reported geneNR
Mapped geneSTAT3
Upstream gene id
Downstream gene id
SNP gene ids6774
Upstream gene distance
Downstream gene distance
SNP risk allelers6503695-?
SNPsrs6503695
Merged
SNP id current6503695
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.00000000000001
Pvalue mlog14
P value text(EA)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 9000000] (imputed)
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST003044