SNP Detail For rs6491679
1.Mapping Information
Human SNP ID rs6491679
Human chromosome chr13
Human SNP position 102278224
Pig chromosome chr11
Pig SNP position 78041886
2.Annotation Information
PubMed ID23509962
JournalBMC Med Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23509962
StudyA genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.
Disease/TraitVenous thromboembolism (SNP x SNP interaction)
Initial sample411 European ancestry cases, 1,228 European ancestry controls
Replication sample1,542 European ancestry cases, 1,110 European ancestry controls
Region5q12.1 x 13q33.1
Chromosome idchr5 x 13
Chromosome position62689026 x 102278224
Reported geneNR x NR
Mapped geneIPO11 - ISCA1P1 x FGF14
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers1423386-G x rs6491679-G
SNPsrs1423386 x rs6491679
Merged0
SNP id current
Contextintergenic_variant x intron_variant
Intergenic
Allele frequency
P value0.000000002
Pvalue mlog8.69897000433601
P value text
Or beta1.73
%95 Ci[NR]
PlatformIllumina [291872]
CNVN
Mapped traitvenous thromboembolism
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004286
Study accessionGCST001913