SNP Detail For rs6488619
1.Mapping Information
Human SNP ID rs6488619
Human chromosome chr12
Human SNP position 13774962
Pig chromosome chr5
Pig SNP position 62050895
2.Annotation Information
PubMed ID22116950
JournalHum Reprod
Linkwww.ncbi.nlm.nih.gov/pubmed/22116950
StudyGenetic variants and environmental factors associated with hormonal markers of ovarian reserve in Caucasian and African American women.
Disease/TraitOvarian reserve
Initial sample232 European ancestry female individuals, 200 African American female individuals
Replication sampleNA
Region12p13.1
Chromosome idchr12
Chromosome position13774962
Reported geneGRIN2B
Mapped geneGRIN2B
Upstream gene id
Downstream gene id
SNP gene ids2904
Upstream gene distance
Downstream gene distance
SNP risk allelers6488619-?
SNPsrs6488619
Merged0
SNP id current6488619
Contextintron_variant
Intergenic0
Allele frequency
P value0.0000009
Pvalue mlog6.04575749056067
P value text(FSH levels - EA)
Or beta
%95 Ci
PlatformAffymetrix [677261]
CNVN
Mapped traitovarian reserve
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004770
Study accessionGCST001330