SNP Detail For rs6486121
1.Mapping Information
Human SNP ID rs6486121
Human chromosome chr11
Human SNP position 13334223
Pig chromosome chr2
Pig SNP position 49442027
2.Annotation Information
PubMed ID25352340
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/25352340
StudyNovel loci affecting iron homeostasis and their effects in individuals at risk for hemochromatosis.
Disease/TraitIron status biomarkers (transferrin levels)
Initial sample23,986 European ancestry individuals
Replication sampleUp to 24,986 European ancestry individuals
Region11p15.3
Chromosome idchr11
Chromosome position13334223
Reported geneARNTL
Mapped geneARNTL
Upstream gene id
Downstream gene id
SNP gene ids406
Upstream gene distance
Downstream gene distance
SNP risk allelers6486121-T
SNPsrs6486121
Merged0
SNP id current6486121
Contextintron_variant
Intergenic0
Allele frequency0.631
P value0.0000000004
Pvalue mlog9.39794000867203
P value text
Or beta0.046
%95 Ci[0.032-0.060] unit decrease
PlatformAffymetrix, Illumina [~ 2100000] (imputed)
CNVN
Mapped traitiron biomarker measurement, transferrin measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004461, http://www.ebi.ac.uk/efo/EFO_0006341
Study accessionGCST002678