Human SNP ID | rs6486121 |
---|---|
Human chromosome | chr11 |
Human SNP position | 13334223 |
Pig chromosome | chr2 |
Pig SNP position | 49442027 |
PubMed ID | 25352340 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/25352340 |
Study | Novel loci affecting iron homeostasis and their effects in individuals at risk for hemochromatosis. |
Disease/Trait | Iron status biomarkers (transferrin levels) |
Initial sample | 23,986 European ancestry individuals |
Replication sample | Up to 24,986 European ancestry individuals |
Region | 11p15.3 |
Chromosome id | chr11 |
Chromosome position | 13334223 |
Reported gene | ARNTL |
Mapped gene | ARNTL |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 406 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6486121-T |
SNPs | rs6486121 |
Merged | 0 |
SNP id current | 6486121 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.631 |
P value | 0.0000000004 |
Pvalue mlog | 9.39794000867203 |
P value text | |
Or beta | 0.046 |
%95 Ci | [0.032-0.060] unit decrease |
Platform | Affymetrix, Illumina [~ 2100000] (imputed) |
CNV | N |
Mapped trait | iron biomarker measurement, transferrin measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004461, http://www.ebi.ac.uk/efo/EFO_0006341 |
Study accession | GCST002678 |