SNP Detail For rs6479527
1.Mapping Information
Human SNP ID rs6479527
Human chromosome chr9
Human SNP position 94096129
Pig chromosome chr3
Pig SNP position 44798861
2.Annotation Information
PubMed ID24121790
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24121790
StudyA genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett__s esophagus.
Disease/TraitEsophageal adenocarcinoma
Initial sample1,516 European ancestry cases, 3,209 European ancestry controls
Replication sample874 European ancestry cases, 6,911 European ancestry controls
Region9q22.32
Chromosome idchr9
Chromosome position94096129
Reported genePTPDC1
Mapped genePTPDC1
Upstream gene id
Downstream gene id
SNP gene ids138639
Upstream gene distance
Downstream gene distance
SNP risk allelers6479527-C
SNPsrs6479527
Merged0
SNP id current6479527
Contextintron_variant
Intergenic0
Allele frequency0.511
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.1765
%95 Ci[1.1-1.27]
PlatformIllumina [922031]
CNVN
Mapped traitesophageal adenocarcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000478
Study accessionGCST002232