Human SNP ID | rs6479527 |
---|---|
Human chromosome | chr9 |
Human SNP position | 94096129 |
Pig chromosome | chr3 |
Pig SNP position | 44798861 |
PubMed ID | 24121790 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24121790 |
Study | A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett__s esophagus. |
Disease/Trait | Esophageal adenocarcinoma |
Initial sample | 1,516 European ancestry cases, 3,209 European ancestry controls |
Replication sample | 874 European ancestry cases, 6,911 European ancestry controls |
Region | 9q22.32 |
Chromosome id | chr9 |
Chromosome position | 94096129 |
Reported gene | PTPDC1 |
Mapped gene | PTPDC1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 138639 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6479527-C |
SNPs | rs6479527 |
Merged | 0 |
SNP id current | 6479527 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.511 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 1.1765 |
%95 Ci | [1.1-1.27] |
Platform | Illumina [922031] |
CNV | N |
Mapped trait | esophageal adenocarcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000478 |
Study accession | GCST002232 |