Human SNP ID | rs6478241 |
---|---|
Human chromosome | chr9 |
Human SNP position | 116490350 |
Pig chromosome | chr1 |
Pig SNP position | 288327352 |
PubMed ID | 22683712 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22683712 |
Study | Genome-wide association analysis identifies susceptibility loci for migraine without aura. |
Disease/Trait | Migraine |
Initial sample | 2,326 European ancestry cases, 4,580 European ancestry controls |
Replication sample | 2,508 European ancestry cases, 2,652 European ancestry controls |
Region | 9q33.1 |
Chromosome id | chr9 |
Chromosome position | 116490350 |
Reported gene | ASTN2 |
Mapped gene | ASTN2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 23245 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6478241-A |
SNPs | rs6478241 |
Merged | 0 |
SNP id current | 6478241 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.38 |
P value | 0.00000004 |
Pvalue mlog | 7.39794000867203 |
P value text | |
Or beta | 1.16 |
%95 Ci | [1.10-1.23] |
Platform | Illumina [1246388] (imputed) |
CNV | N |
Mapped trait | migraine disorder |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003821 |
Study accession | GCST001563 |
PubMed ID | 23793025 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23793025 |
Study | Genome-wide meta-analysis identifies new susceptibility loci for migraine. |
Disease/Trait | Migraine without aura |
Initial sample | 7,107 European ancestry cases, 69,427 European ancestry controls |
Replication sample | NA |
Region | 9q33.1 |
Chromosome id | chr9 |
Chromosome position | 116490350 |
Reported gene | ASTN2 |
Mapped gene | ASTN2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 23245 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6478241-A |
SNPs | rs6478241 |
Merged | 0 |
SNP id current | 6478241 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.38 |
P value | 0.0000001 |
Pvalue mlog | 7 |
P value text | |
Or beta | 1.12 |
%95 Ci | [1.08-1.18] |
Platform | Affymetrix, Illumina [~ 2300000] (imputed) |
CNV | N |
Mapped trait | migraine disorder |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003821 |
Study accession | GCST002078 |
PubMed ID | 23793025 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23793025 |
Study | Genome-wide meta-analysis identifies new susceptibility loci for migraine. |
Disease/Trait | Migraine - clinic-based |
Initial sample | 5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls |
Replication sample | NA |
Region | 9q33.1 |
Chromosome id | chr9 |
Chromosome position | 116490350 |
Reported gene | ASTN2 |
Mapped gene | ASTN2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 23245 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6478241-A |
SNPs | rs6478241 |
Merged | 0 |
SNP id current | 6478241 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.38 |
P value | 0.000000001 |
Pvalue mlog | 9 |
P value text | |
Or beta | 1.16 |
%95 Ci | [1.11-1.22] |
Platform | Affymetrix, Illumina [~ 2300000] (imputed) |
CNV | N |
Mapped trait | migraine disorder |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003821 |
Study accession | GCST002079 |