SNP Detail For rs6478241
1.Mapping Information
Human SNP ID rs6478241
Human chromosome chr9
Human SNP position 116490350
Pig chromosome chr1
Pig SNP position 288327352
2.Annotation Information
PubMed ID22683712
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22683712
StudyGenome-wide association analysis identifies susceptibility loci for migraine without aura.
Disease/TraitMigraine
Initial sample2,326 European ancestry cases, 4,580 European ancestry controls
Replication sample2,508 European ancestry cases, 2,652 European ancestry controls
Region9q33.1
Chromosome idchr9
Chromosome position116490350
Reported geneASTN2
Mapped geneASTN2
Upstream gene id
Downstream gene id
SNP gene ids23245
Upstream gene distance
Downstream gene distance
SNP risk allelers6478241-A
SNPsrs6478241
Merged0
SNP id current6478241
Contextintron_variant
Intergenic0
Allele frequency0.38
P value0.00000004
Pvalue mlog7.39794000867203
P value text
Or beta1.16
%95 Ci[1.10-1.23]
PlatformIllumina [1246388] (imputed)
CNVN
Mapped traitmigraine disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003821
Study accessionGCST001563
PubMed ID23793025
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23793025
StudyGenome-wide meta-analysis identifies new susceptibility loci for migraine.
Disease/TraitMigraine without aura
Initial sample7,107 European ancestry cases, 69,427 European ancestry controls
Replication sampleNA
Region9q33.1
Chromosome idchr9
Chromosome position116490350
Reported geneASTN2
Mapped geneASTN2
Upstream gene id
Downstream gene id
SNP gene ids23245
Upstream gene distance
Downstream gene distance
SNP risk allelers6478241-A
SNPsrs6478241
Merged0
SNP id current6478241
Contextintron_variant
Intergenic0
Allele frequency0.38
P value0.0000001
Pvalue mlog7
P value text
Or beta1.12
%95 Ci[1.08-1.18]
PlatformAffymetrix, Illumina [~ 2300000] (imputed)
CNVN
Mapped traitmigraine disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003821
Study accessionGCST002078
PubMed ID23793025
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23793025
StudyGenome-wide meta-analysis identifies new susceptibility loci for migraine.
Disease/TraitMigraine - clinic-based
Initial sample5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls
Replication sampleNA
Region9q33.1
Chromosome idchr9
Chromosome position116490350
Reported geneASTN2
Mapped geneASTN2
Upstream gene id
Downstream gene id
SNP gene ids23245
Upstream gene distance
Downstream gene distance
SNP risk allelers6478241-A
SNPsrs6478241
Merged0
SNP id current6478241
Contextintron_variant
Intergenic0
Allele frequency0.38
P value0.000000001
Pvalue mlog9
P value text
Or beta1.16
%95 Ci[1.11-1.22]
PlatformAffymetrix, Illumina [~ 2300000] (imputed)
CNVN
Mapped traitmigraine disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003821
Study accessionGCST002079