Human SNP ID | rs6478109 |
---|---|
Human chromosome | chr9 |
Human SNP position | 114806486 |
Pig chromosome | chr1 |
Pig SNP position | 286461848 |
PubMed ID | 18758464 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/18758464 |
Study | Loci on 20q13 and 21q22 are associated with pediatric-onset inflammatory bowel disease. |
Disease/Trait | Inflammatory bowel disease |
Initial sample | 1,011 European ancestry cases, 4,250 European ancestry controls |
Replication sample | 1,922 European ancestry cases, 14,124 European ancestry controls |
Region | 9q32 |
Chromosome id | chr9 |
Chromosome position | 114806486 |
Reported gene | TNFSF15 |
Mapped gene | TNFSF15 - TNFSF8 |
Upstream gene id | 9966 |
Downstream gene id | 944 |
SNP gene ids | |
Upstream gene distance | 358 |
Downstream gene distance | 86857 |
SNP risk allele | rs6478109-? |
SNPs | rs6478109 |
Merged | 0 |
SNP id current | 6478109 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.69 |
P value | 0.00000003 |
Pvalue mlog | 7.52287874528033 |
P value text | |
Or beta | 1.36 |
%95 Ci | [1.22-1.52] |
Platform | Illumina [NR] |
CNV | N |
Mapped trait | inflammatory bowel disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003767 |
Study accession | GCST000225 |