SNP Detail For rs6478109
1.Mapping Information
Human SNP ID rs6478109
Human chromosome chr9
Human SNP position 114806486
Pig chromosome chr1
Pig SNP position 286461848
2.Annotation Information
PubMed ID18758464
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/18758464
StudyLoci on 20q13 and 21q22 are associated with pediatric-onset inflammatory bowel disease.
Disease/TraitInflammatory bowel disease
Initial sample1,011 European ancestry cases, 4,250 European ancestry controls
Replication sample1,922 European ancestry cases, 14,124 European ancestry controls
Region9q32
Chromosome idchr9
Chromosome position114806486
Reported geneTNFSF15
Mapped geneTNFSF15 - TNFSF8
Upstream gene id9966
Downstream gene id944
SNP gene ids
Upstream gene distance358
Downstream gene distance86857
SNP risk allelers6478109-?
SNPsrs6478109
Merged0
SNP id current6478109
Contextupstream_gene_variant
Intergenic1
Allele frequency0.69
P value0.00000003
Pvalue mlog7.52287874528033
P value text
Or beta1.36
%95 Ci[1.22-1.52]
PlatformIllumina [NR]
CNVN
Mapped traitinflammatory bowel disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003767
Study accessionGCST000225