SNP Detail For rs6478106
1.Mapping Information
Human SNP ID rs6478106
Human chromosome chr9
Human SNP position 114783386
Pig chromosome chr1
Pig SNP position 286434401
2.Annotation Information
PubMed ID23266558
JournalGastroenterology
Linkwww.ncbi.nlm.nih.gov/pubmed/23266558
StudyA genome-wide association study identifies 2 susceptibility Loci for Crohn__s disease in a Japanese population.
Disease/TraitCrohn__s disease
Initial sample372 Japanese ancestry cases,3,389 Japanese ancestry controls
Replication sampleUp to 1,151 Japanese ancestry cases, up to 15,800 Japanese ancestry controls
Region9q32
Chromosome idchr9
Chromosome position114783386
Reported geneLOC100129633, LOC645266, TNFSF8, TNFSF15
Mapped geneLOC105376231 - TNFSF15
Upstream gene id105376231
Downstream gene id9966
SNP gene ids
Upstream gene distance83213
Downstream gene distance1249
SNP risk allelers6478106-T
SNPsrs6478106
Merged0
SNP id current6478106
Contextdownstream_gene_variant
Intergenic1
Allele frequencyNR
P value5E-46
Pvalue mlog45.3010299956639
P value text
Or beta1.73
%95 Ci[1.60-1.86]
PlatformIllumina [4929034] (imputed)
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST001785