Human SNP ID | rs6478106 |
---|---|
Human chromosome | chr9 |
Human SNP position | 114783386 |
Pig chromosome | chr1 |
Pig SNP position | 286434401 |
PubMed ID | 23266558 |
---|---|
Journal | Gastroenterology |
Link | www.ncbi.nlm.nih.gov/pubmed/23266558 |
Study | A genome-wide association study identifies 2 susceptibility Loci for Crohn__s disease in a Japanese population. |
Disease/Trait | Crohn__s disease |
Initial sample | 372 Japanese ancestry cases,3,389 Japanese ancestry controls |
Replication sample | Up to 1,151 Japanese ancestry cases, up to 15,800 Japanese ancestry controls |
Region | 9q32 |
Chromosome id | chr9 |
Chromosome position | 114783386 |
Reported gene | LOC100129633, LOC645266, TNFSF8, TNFSF15 |
Mapped gene | LOC105376231 - TNFSF15 |
Upstream gene id | 105376231 |
Downstream gene id | 9966 |
SNP gene ids | |
Upstream gene distance | 83213 |
Downstream gene distance | 1249 |
SNP risk allele | rs6478106-T |
SNPs | rs6478106 |
Merged | 0 |
SNP id current | 6478106 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 5E-46 |
Pvalue mlog | 45.3010299956639 |
P value text | |
Or beta | 1.73 |
%95 Ci | [1.60-1.86] |
Platform | Illumina [4929034] (imputed) |
CNV | N |
Mapped trait | Crohn__s disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000384 |
Study accession | GCST001785 |