Human SNP ID | rs6474412 |
---|---|
Human chromosome | chr8 |
Human SNP position | 42695355 |
Pig chromosome | chr17 |
Pig SNP position | 12694972 |
PubMed ID | 20418888 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20418888 |
Study | Sequence variants at CHRNB3-CHRNA6 and CYP2A6 affect smoking behavior. |
Disease/Trait | Smoking behavior |
Initial sample | 31,266 European ancestry individuals |
Replication sample | 54,731 European ancestry individuals |
Region | 8p11.21 |
Chromosome id | chr8 |
Chromosome position | 42695355 |
Reported gene | CHRNB3, CHRNA6 |
Mapped gene | SMIM19 - LOC105379396 |
Upstream gene id | 114926 |
Downstream gene id | 105379396 |
SNP gene ids | |
Upstream gene distance | 142358 |
Downstream gene distance | 567 |
SNP risk allele | rs6474412-T |
SNPs | rs6474412 |
Merged | 0 |
SNP id current | 6474412 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.78 |
P value | 0.00000001 |
Pvalue mlog | 8 |
P value text | |
Or beta | 0.29 |
%95 Ci | [0.19-0.39] CPD increase |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | smoking behavior |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004318 |
Study accession | GCST000667 |