SNP Detail For rs6474412
1.Mapping Information
Human SNP ID rs6474412
Human chromosome chr8
Human SNP position 42695355
Pig chromosome chr17
Pig SNP position 12694972
2.Annotation Information
PubMed ID20418888
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20418888
StudySequence variants at CHRNB3-CHRNA6 and CYP2A6 affect smoking behavior.
Disease/TraitSmoking behavior
Initial sample31,266 European ancestry individuals
Replication sample54,731 European ancestry individuals
Region8p11.21
Chromosome idchr8
Chromosome position42695355
Reported geneCHRNB3, CHRNA6
Mapped geneSMIM19 - LOC105379396
Upstream gene id114926
Downstream gene id105379396
SNP gene ids
Upstream gene distance142358
Downstream gene distance567
SNP risk allelers6474412-T
SNPsrs6474412
Merged0
SNP id current6474412
Contextupstream_gene_variant
Intergenic1
Allele frequency0.78
P value0.00000001
Pvalue mlog8
P value text
Or beta0.29
%95 Ci[0.19-0.39] CPD increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitsmoking behavior
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318
Study accessionGCST000667