SNP Detail For rs6472903
1.Mapping Information
Human SNP ID rs6472903
Human chromosome chr8
Human SNP position 75318066
Pig chromosome chr4
Pig SNP position 66322092
2.Annotation Information
PubMed ID23535729
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23535729
StudyLarge-scale genotyping identifies 41 new loci associated with breast cancer risk.
Disease/TraitBreast cancer
Initial sample10,052 European ancestry cases, 12,575 European ancestry controls
Replication sample45,290 European ancestry cases, 41,880 European ancestry controls
Region8q21.13
Chromosome idchr8
Chromosome position75318066
Reported geneintergenic
Mapped geneCASC9 - HNF4G
Upstream gene id101805492
Downstream gene id3174
SNP gene ids
Upstream gene distance39177
Downstream gene distance89615
SNP risk allelers6472903-T
SNPsrs6472903
Merged0
SNP id current6472903
Contextintron_variant
Intergenic1
Allele frequency0.82
P value0.00000000000000002
Pvalue mlog16.698970004336
P value text
Or beta1.1
%95 Ci[1.08-1.12]
PlatformAffymetrix, Illumina [~ 2600000] (imputed)
CNVN
Mapped traitbreast carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000305
Study accessionGCST001937