Human SNP ID | rs6472903 |
---|---|
Human chromosome | chr8 |
Human SNP position | 75318066 |
Pig chromosome | chr4 |
Pig SNP position | 66322092 |
PubMed ID | 23535729 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23535729 |
Study | Large-scale genotyping identifies 41 new loci associated with breast cancer risk. |
Disease/Trait | Breast cancer |
Initial sample | 10,052 European ancestry cases, 12,575 European ancestry controls |
Replication sample | 45,290 European ancestry cases, 41,880 European ancestry controls |
Region | 8q21.13 |
Chromosome id | chr8 |
Chromosome position | 75318066 |
Reported gene | intergenic |
Mapped gene | CASC9 - HNF4G |
Upstream gene id | 101805492 |
Downstream gene id | 3174 |
SNP gene ids | |
Upstream gene distance | 39177 |
Downstream gene distance | 89615 |
SNP risk allele | rs6472903-T |
SNPs | rs6472903 |
Merged | 0 |
SNP id current | 6472903 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.82 |
P value | 0.00000000000000002 |
Pvalue mlog | 16.698970004336 |
P value text | |
Or beta | 1.1 |
%95 Ci | [1.08-1.12] |
Platform | Affymetrix, Illumina [~ 2600000] (imputed) |
CNV | N |
Mapped trait | breast carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000305 |
Study accession | GCST001937 |