SNP Detail For rs6471393
1.Mapping Information
Human SNP ID rs6471393
Human chromosome chr8
Human SNP position 93703063
Pig chromosome chr4
Pig SNP position 46384428
2.Annotation Information
PubMed ID25461247
JournalPharmacogenet Genomics
Linkwww.ncbi.nlm.nih.gov/pubmed/25461247
StudyGenome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.
Disease/TraitResponse to efavirenz-containing treatment in HIV 1 infection (virologic failure)
Initial sampleUp to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals
Replication sampleNA
Region8q22.1
Chromosome idchr8
Chromosome position93703063
Reported geneNR
Mapped geneFAM92A1
Upstream gene id
Downstream gene id
SNP gene ids137392
Upstream gene distance
Downstream gene distance
SNP risk allelers6471393-A
SNPsrs6471393
Merged0
SNP id current6471393
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000007
Pvalue mlog5.15490195998574
P value text(phenotype 3)
Or beta1.57
%95 Ci[NR]
PlatformIllumina [> 8000000] (imputed)
CNVN
Mapped traitHIV-1 infection, response to efavirenz, virologic response measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000180, http://www.ebi.ac.uk/efo/EFO_0006904, http://www.ebi.ac.uk/efo/EFO_0006906
Study accessionGCST002771